Fungal MLST Database

Pairwise sequence alignment

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Pairwise sequence alignment parameters

Minimum similarity to keep results (0-100%):

Gap creation penalty (1-100):

Minimum overlap to keep results (0-100%):

Gap extension penalty (1-10):

Minimum overlap for rating reward (0-100%):

Word size (1-256):

Maximum alignments to display (1-1000):

Penalty for a nucleotide mismatch:

select

Select sorting mode:

select

Reward for a nucleotide match:

select

Select the reference(s) file(s) to be used for the alignment:

Name		Location	Status
Bipolaris	http://mlst.mycologylab.org/	Local	Reachable	E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB	4.34
CGattii	http://mlst.mycologylab.org/	Local	Reachable	E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB	5.888
CNeof	http://mlst.mycologylab.org/	Local	Reachable	E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB	4.32
PJ	http://mlst.mycologylab.org/	Local	Reachable	E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB	0.668
Scedo	http://mlst.mycologylab.org/	Local	Reachable	E:\BioloMICSBasedBio\mlstnew.mycologylab.org\Alignments\DB	2.064

Paste sequence to align:

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